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yvrE [2018-02-08 10:16:17]
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yvrE [2018-02-08 10:16:17]

general stress protein, similar to senescence marker protein-30
locus
BSU33200
pI
4.62
mw
33.05 kDa
protein length
292 aa Sequence Blast
gene length
876 bp Sequence Blast
function
survival of salt stress
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    3,405,664 → 3,406,542

    The protein

    Protein family

  • SMP-30/CGR1 family (according to Swiss-Prot)

    • Structure

  • [PDB|3G4E] (the human protein, 33% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]
    description
    [Pubmed|16306698]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • induced by stress ([protein|search|SigB]) [Pubmed|15805528]
    • view in new tab

    genes
    [gene|7098319D8E88FDC2A629A3F4A21507FD7A649385|yvrHb]-[gene|96E4470EF4B558F4EC318FEBF58B779BA50DB7E2|yvrG]-[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B048 (yvrE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1047 NBRP B. subtilis, Japan]
  • BKE33200 (Δ[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTTACACCTCTTTAG, downstream forward: _UP4_TAAAAAAAACGCATCCGAAA
  • BKK33200 (Δ[gene|0F65F634368E935585FC015BA64085F3A2244F9B|yvrE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTTACACCTCTTTAG, downstream forward: _UP4_TAAAAAAAACGCATCCGAAA

    • References

  • 15805528,16306698,29379263